PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016460070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 168aa    MW: 18783.5 Da    PI: 9.72
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016460070.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-054062123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C k Fs++  L  H++ H
  XP_016460070.1 40 YECHFCLKKFSNSRALGGHQNAH 62
                    99******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-43766IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.15E-63767No hitNo description
PROSITE profilePS5015711.1774067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDERPKEKTS ICMNSSGIVL PNPNENLRNL SVSAVMELKY ECHFCLKKFS NSRALGGHQN  60
AHRRERLKKK RMDLEAKRAS SSMFYLNALI RNNGVMYPYS YVPTIVYGSS LISFSSVYHC  120
QNGTHSPCFT VASSSGELYL QNSSFIAIQG GESRGRYPLS LVIVPSTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588286.11e-121PREDICTED: uncharacterized protein LOC104085872
RefseqXP_016460070.11e-122PREDICTED: zinc finger protein JAGGED-like
TrEMBLM1C9N85e-71M1C9N8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000628661e-70(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA619466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.11e-11C2H2 family protein